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この記事では細菌の属を列挙する。現在認められている分類法は、原核生物の命名法リスト（LPSN）[1]と国立生物工学情報センター（NCBI） [2]に基づいている。しかし、多くの分類学上の名称はGTDBリリース08-RS214（2023年4月28日）から取られている。[3] [4] [5] [6] [7] [8] [9] [10] [11]
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リスト
Notes: List of clades needed to be added:
- Actinomycetota > Actinomycetia > Actinobacteridae
- Bacillota A > Clostridiia > "Lachnospirales" > Oscillospiraceae, Ruminococcaceae
- Bacteroidota > Bacteroidia
- Cyanobacteriota > Cyanobacteria
- Pseudomonadota (Proteobacteria s.s.) > "Caulobacteria", "Pseudomonadia"
See also
- Branching order of bacterial phyla (Woese, 1987)
- Branching order of bacterial phyla (Gupta, 2001)
- Branching order of bacterial phyla (Cavalier-Smith, 2002)
- Branching order of bacterial phyla (Rappe and Giovanoni, 2003)
- Branching order of bacterial phyla (Battistuzzi et al., 2004)
- Branching order of bacterial phyla (Ciccarelli et al., 2006)
- Branching order of bacterial phyla after ARB Silva Living Tree
- Branching order of bacterial phyla (Genome Taxonomy Database, 2018)
- Bacterial phyla
- List of Archaea genera
- List of bacterial orders
- LPSN, list of accepted bacterial and archaeal names
- Human microbiome project
- MicroorganismPhyla
References
- ^ J.P. Euzéby. "Bacteria". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2021-06-27.
- ^ Sayers; et al. "Bacteria". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2021-03-20.
- ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ Parks, DH; Chuvochina, M; Waite, DW; Rinke, C; Skarshewski, A; Chaumeil, PA; Hugenholtz, P (November 2018). "A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life". Nature Biotechnology. 36 (10): 996–1004. bioRxiv 10.1101/256800. doi:10.1038/nbt.4229. PMID 30148503. S2CID 52093100.
- ^ Parks, DH; Chuvochina, M; Chaumeil, PA; Rinke, C; Mussig, AJ; Hugenholtz, P (September 2020). "A complete domain-to-species taxonomy for Bacteria and Archaea". Nature Biotechnology. 38 (9): 1079–1086. bioRxiv 10.1101/771964. doi:10.1038/s41587-020-0501-8. PMID 32341564. S2CID 216560589.
- ^ Chaumeil, PA; Mussig, AJ; Hugenholtz, P; Parks, DH (15 November 2019). "GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database". Bioinformatics. 36 (6): 1925–1927. doi:10.1093/bioinformatics/btz848. PMC 7703759. PMID 31730192.
- ^ Barns SM, Cain EC, Sommerville L, Kuske CR (2007). "Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum". Appl. Environ. Microbiol. 73 (9): 3113–6. Bibcode:2007ApEnM..73.3113B. doi:10.1128/AEM.02012-06. PMC 1892891. PMID 17337544.
- ^ Quaiser A, Ochsenreiter T, Lanz C, et al. (2003). "Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics". Mol. Microbiol. 50 (2): 563–75. doi:10.1046/j.1365-2958.2003.03707.x. PMID 14617179. S2CID 25162803.
- ^ Hugenholtz P, Stackebrandt E (2004). "Reclassification of Sphaerobacter thermophilus from the subclass Sphaerobacteridae in the phylum Actinobacteria to the class Thermomicrobia (emended description) in the phylum Chloroflexi (emended description)". Int J Syst Evol Microbiol. 54 (Pt 6): 2049–51. doi:10.1099/ijs.0.03028-0. PMID 15545432.
External links
- Bacteria at the U.S. National Library of Medicine Medical Subject Headings (MeSH)